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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6240-RA through 18771 annotations produced 1 hits



CG6240 (Cpr92A):

Annotation Number : CG6240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038714
Gbrowse : chr3R:15423484-15424195 (-) // 100.0 //
Probeset : 1630734_at
Accessions : protein= NP_650813;, nucleotide= NM_142556;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0038714.
BioGrid reports that CG6240 interacts with CG7073 CG7361 CG9036 CG9184 .
VDRC has 2 RNAi stocks for FBgn0038714 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.60None
Head6 ± 01 of 4 0.70None
Eye5 ± 10 of 4 0.56None
Thoracicoabdominal ganglion9 ± 21 of 4 1.00None
Salivary gland25 ± 51 of 4 2.76None
Crop10 ± 20 of 4 1.10None
Midgut17 ± 12 of 4 1.90Up
Tubule6 ± 00 of 4 0.70Down
Hindgut13 ± 12 of 4 1.40None
Heart0 ± 00 of 4 0.11Down
Fat body5 ± 10 of 4 0.62None
Ovary10 ± 12 of 4 1.10None
Testis15 ± 14 of 4 1.70Up
Male accessory glands10 ± 10 of 4 1.20None
Virgin spermatheca4 ± 20 of 4 0.48None
Mated spermatheca5 ± 10 of 4 0.65None
Adult carcass10 ± 30 of 4 1.20None
Larval CNS5 ± 20 of 4 0.64None
Larval Salivary gland7 ± 30 of 4 0.85None
Larval midgut7 ± 10 of 4 0.81None
Larval tubule70 ± 84 of 4 7.80Up
Larval hindgut6 ± 10 of 4 0.75None
Larval fat body12 ± 30 of 4 1.40None
Larval trachea7 ± 30 of 4 0.86None
Larval carcass14 ± 20 of 4 1.55None
S2 cells (growing)7 ± 20 of 4 0.88None
Whole fly9 ± 11 of 4

Looking for CG6240-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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