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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6241-RA through 18771 annotations produced 1 hits



(CG6241):

Annotation Number : CG6241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037792
Gbrowse : chr3R:5966400-5969896 (-) // 100.0 //
Probeset : 1638848_at
Accessions : protein= NP_649982;, nucleotide= NM_141725;
FlyMine data for FBgn0037792.
VDRC has 1 RNAi stocks for FBgn0037792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 14 of 4 0.60Down
Head17 ± 10 of 4 0.30Down
Eye13 ± 11 of 4 0.20Down
Thoracicoabdominal ganglion27 ± 24 of 4 0.40Down
Salivary gland50 ± 72 of 4 0.74None
Crop22 ± 00 of 4 0.30Down
Midgut19 ± 50 of 4 0.30Down
Tubule12 ± 20 of 4 0.20Down
Hindgut17 ± 30 of 4 0.20Down
Heart11 ± 21 of 4 0.16Down
Fat body13 ± 50 of 4 0.20Down
Ovary134 ± 14 of 4 2.00Up
Testis20 ± 24 of 4 0.30Down
Male accessory glands26 ± 20 of 4 0.40Down
Virgin spermatheca14 ± 20 of 4 0.20Down
Mated spermatheca9 ± 20 of 4 0.13Down
Adult carcass12 ± 40 of 4 0.20Down
Larval CNS67 ± 54 of 4 0.99None
Larval Salivary gland24 ± 11 of 4 0.35Down
Larval midgut12 ± 30 of 4 0.18Down
Larval tubule16 ± 10 of 4 0.20Down
Larval hindgut19 ± 10 of 4 0.29Down
Larval fat body10 ± 30 of 4 0.10Down
Larval trachea32 ± 24 of 4 0.48Down
Larval carcass18 ± 20 of 4 0.27Down
S2 cells (growing)122 ± 14 of 4 1.79Up
Whole fly68 ± 44 of 4

Looking for CG6241-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime