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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6249-RA through 18771 annotations produced 1 hits



Csl4 (Csl4):

Annotation Number : CG6249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032346
Gbrowse : chr2L:11122563-11123792 (-) // 100.0 //
Probeset : 1639219_at
Accessions : protein= NP_609492;, nucleotide= NM_135648;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0005515 // protein bind
FlyMine data for FBgn0032346.
BioGrid reports that CG6249 interacts with CG8025 .
VDRC has 1 RNAi stocks for FBgn0032346 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 24 of 4 0.60Down
Head47 24 of 4 0.40Down
Eye29 04 of 4 0.24Down
Thoracicoabdominal ganglion84 14 of 4 0.70Down
Salivary gland38 44 of 4 0.32Down
Crop48 34 of 4 0.40Down
Midgut37 34 of 4 0.30Down
Tubule51 64 of 4 0.40Down
Hindgut37 34 of 4 0.30Down
Heart34 24 of 4 0.28Down
Fat body47 104 of 4 0.39Down
Ovary243 14 of 4 2.00Up
Testis56 04 of 4 0.50Down
Male accessory glands119 74 of 4 1.00None
Virgin spermatheca58 14 of 4 0.48Down
Mated spermatheca86 14 of 4 0.71Down
Adult carcass33 34 of 4 0.30Down
Larval CNS138 74 of 4 1.14None
Larval Salivary gland72 74 of 4 0.60Down
Larval midgut32 04 of 4 0.26Down
Larval tubule16 14 of 4 0.10Down
Larval hindgut51 64 of 4 0.42Down
Larval fat body24 34 of 4 0.20Down
Larval trachea75 64 of 4 0.62Down
Larval carcass53 134 of 4 0.45Down
S2 cells (growing)85 14 of 4 0.71Down
Whole fly121 74 of 4

Looking for CG6249-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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