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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6251-RA through 18771 annotations produced 1 hits



Nucleoporin (Nup62):

Annotation Number : CG6251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034118
Gbrowse : chr2R:12231881-12233333 (+) // 100.0 //
Probeset : 1628161_at
Accessions : protein= NP_611120;, nucleotide= NM_137276;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005643 // nuclear pore // non-traceable
FlyMine data for FBgn0034118.
BDGP gene expression has embryonic in situ data for CG6251: 16 pix of staining in 14 body parts.
Homophila reports that CG6251 is a close match (3e-39) to human gene IBSN;NUP62;SNDI (NP_714941), a gene associated with Striatonigral degeneration, infantile, 271930 (3).
BioGrid reports that CG6251 interacts with CG6819 CG7375 CG8831 CG9951 .
TRiP has 1 RNAi stocks for FBgn0034118 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 54 of 4 0.70Down
Head92 54 of 4 0.40Down
Eye171 24 of 4 0.83Down
Thoracicoabdominal ganglion124 94 of 4 0.60Down
Salivary gland81 54 of 4 0.40Down
Crop97 14 of 4 0.50Down
Midgut60 74 of 4 0.30Down
Tubule36 24 of 4 0.20Down
Hindgut63 34 of 4 0.30Down
Heart73 64 of 4 0.36Down
Fat body48 84 of 4 0.24Down
Ovary394 54 of 4 1.90Up
Testis264 124 of 4 1.30Up
Male accessory glands127 74 of 4 0.60Down
Virgin spermatheca61 24 of 4 0.30Down
Mated spermatheca73 44 of 4 0.36Down
Adult carcass58 44 of 4 0.30Down
Larval CNS345 104 of 4 1.68Up
Larval Salivary gland132 104 of 4 0.64Down
Larval midgut35 24 of 4 0.17Down
Larval tubule68 34 of 4 0.30Down
Larval hindgut94 44 of 4 0.46Down
Larval fat body76 134 of 4 0.40Down
Larval trachea231 194 of 4 1.12None
Larval carcass76 64 of 4 0.37Down
S2 cells (growing)217 34 of 4 1.06None
Whole fly206 74 of 4

Looking for CG6251-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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