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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6255-RA through 18771 annotations produced 1 hits



(CG6255):

Annotation Number : CG6255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038708
Gbrowse : chr3R:15287600-15288788 (-) // 100.0 //
Probeset : 1638094_at
Accessions : protein= NP_650809;, nucleotide= NM_142552;
Pathway : 0045244 // succinate-CoA ligase complex (GDP-forming) // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003878 // ATP citrate synthase activity // inf
FlyMine data for FBgn0038708.
BDGP gene expression has embryonic in situ data for CG6255: 4 pix of staining in 1 body parts.
Homophila reports that CG6255 is a close match (5e-83) to human gene SUCLA1;SUCLG1 (NP_003840), a gene associated with Lactic acidosis, fatal infantile, 245400 (3).
VDRC has 3 RNAi stocks for FBgn0038708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 30 of 4 0.10Down
Head14 ± 10 of 4 0.10Down
Eye9 ± 01 of 4 0.09Down
Thoracicoabdominal ganglion8 ± 10 of 4 0.10Down
Salivary gland45 ± 71 of 4 0.42Down
Crop27 ± 24 of 4 0.30Down
Midgut29 ± 20 of 4 0.30Down
Tubule21 ± 13 of 4 0.20Down
Hindgut29 ± 24 of 4 0.30Down
Heart14 ± 33 of 4 0.13Down
Fat body30 ± 53 of 4 0.28Down
Ovary14 ± 11 of 4 0.10Down
Testis1173 ± 634 of 411.00Up
Male accessory glands29 ± 10 of 4 0.30Down
Virgin spermatheca11 ± 10 of 4 0.11Down
Mated spermatheca11 ± 10 of 4 0.11Down
Adult carcass24 ± 21 of 4 0.20Down
Larval CNS14 ± 24 of 4 0.14Down
Larval Salivary gland33 ± 31 of 4 0.31Down
Larval midgut28 ± 10 of 4 0.27Down
Larval tubule17 ± 42 of 4 0.20Down
Larval hindgut21 ± 04 of 4 0.20Down
Larval fat body123 ± 524 of 4 1.20None
Larval trachea13 ± 11 of 4 0.12Down
Larval carcass40 ± 24 of 4 0.38Down
S2 cells (growing)19 ± 12 of 4 0.19Down
Whole fly106 ± 24 of 4

Looking for CG6255-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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