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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6259-RA through 18771 annotations produced 1 hits



(CG6259):

Annotation Number : CG6259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036740
Gbrowse : chr3L:17613217-17614598 (-) // 100.0 //
Probeset : 1638501_at
Accessions : protein= NP_648997;, nucleotide= NM_140740;
Pathway : 0005768 // endosome // inferred from electronic annotation /// 0010008 // endosome membrane // inferred from electronic
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036740.
BDGP gene expression has embryonic in situ data for CG6259: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036740 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain571 214 of 4 1.50Up
Head532 104 of 4 1.40Up
Eye849 174 of 4 2.20Up
Thoracicoabdominal ganglion583 94 of 4 1.50Up
Salivary gland399 204 of 4 1.03None
Crop641 234 of 4 1.70Up
Midgut546 124 of 4 1.40Up
Tubule966 464 of 4 2.50Up
Hindgut578 94 of 4 1.50Up
Heart531 304 of 4 1.38Up
Fat body307 214 of 4 0.80Down
Ovary368 104 of 4 1.00None
Testis701 104 of 4 1.80Up
Male accessory glands459 94 of 4 1.20Up
Virgin spermatheca705 254 of 4 1.83Up
Mated spermatheca741 254 of 4 1.92Up
Adult carcass502 64 of 4 1.30Up
Larval CNS499 324 of 4 1.29Up
Larval Salivary gland725 264 of 4 1.88Up
Larval midgut646 284 of 4 1.67Up
Larval tubule1504 334 of 4 3.90Up
Larval hindgut658 394 of 4 1.71Up
Larval fat body1054 854 of 4 2.70Up
Larval trachea628 314 of 4 1.63Up
Larval carcass770 754 of 4 2.00Up
S2 cells (growing)847 114 of 4 2.19Up
Whole fly386 64 of 4

Looking for CG6259-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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