Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6277-RA through 18771 annotations produced 1 hits



/// (CG6271 /// CG6277):

Annotation Number : CG6277
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039475 /// FBgn0039476
Gbrowse : chr3R:22847790-22848934 (-) // 100.0 //
Probeset : 1623027_s_at
Accessions : protein= NP_651525; /// NP_651526;, nucleotide= NM_143268; /// NM_143269;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0039475 /// FBgn0039476.
Homophila reports that CG6277 is a close match (1e-28) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00None
Head2 10 of 4 0.00None
Eye3 10 of 4 0.03None
Thoracicoabdominal ganglion0 00 of 4 0.00None
Salivary gland1 00 of 4 0.02None
Crop0 00 of 4 0.00None
Midgut2923 1684 of 428.20Up
Tubule1 00 of 4 0.00Down
Hindgut4 20 of 4 0.00None
Heart1 00 of 4 0.02None
Fat body2 20 of 4 0.03None
Ovary0 00 of 4 0.00None
Testis0 00 of 4 0.00None
Male accessory glands1 00 of 4 0.00None
Virgin spermatheca1 00 of 4 0.01None
Mated spermatheca0 00 of 4 0.01None
Adult carcass2 00 of 4 0.00None
Larval CNS0 00 of 4 0.01None
Larval Salivary gland1 00 of 4 0.02None
Larval midgut601 3524 of 4 5.81None
Larval tubule0 00 of 4 0.00None
Larval hindgut1 00 of 4 0.01None
Larval fat body2 00 of 4 0.00None
Larval trachea0 00 of 4 0.00None
Larval carcass0 00 of 4 0.01None
S2 cells (growing)0 00 of 4 0.01None
Whole fly103 474 of 4

Looking for CG6277-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime