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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6298-RA through 18771 annotations produced 1 hits



Jonah 74E (Jon74E):

Annotation Number : CG6298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023197
Gbrowse : chr3L:17539967-17542143 (-) // 100.0 //
Probeset : 1624824_at
Accessions : protein= NP_648994;, nucleotide= NM_140737;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0023197.
Homophila reports that CG6298 is a close match (5e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
TRiP has 1 RNAi stocks for FBgn0023197 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023197 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 04 of 4 0.00Down
Head53 ± 413 of 4 0.00Down
Eye11 ± 41 of 4 0.00Down
Thoracicoabdominal ganglion15 ± 13 of 4 0.00Down
Salivary gland29 ± 51 of 4 0.01Down
Crop34 ± 124 of 4 0.00Down
Midgut6817 ± 1074 of 4 2.70Up
Tubule11 ± 10 of 4 0.00Down
Hindgut27 ± 14 of 4 0.00Down
Heart8 ± 13 of 4 0.00Down
Fat body18 ± 33 of 4 0.01Down
Ovary9 ± 11 of 4 0.00Down
Testis16 ± 73 of 4 0.00Down
Male accessory glands20 ± 11 of 4 0.00Down
Virgin spermatheca20 ± 23 of 4 0.01Down
Mated spermatheca15 ± 21 of 4 0.01Down
Adult carcass52 ± 173 of 4 0.00Down
Larval CNS15 ± 24 of 4 0.01Down
Larval Salivary gland26 ± 43 of 4 0.01Down
Larval midgut6064 ± 2294 of 4 2.43Up
Larval tubule12 ± 11 of 4 0.00Down
Larval hindgut32 ± 44 of 4 0.01Down
Larval fat body33 ± 103 of 4 0.00Down
Larval trachea26 ± 324 of 4 0.01Down
Larval carcass23 ± 23 of 4 0.01Down
S2 cells (growing)14 ± 22 of 4 0.01Down
Whole fly2499 ± 3414 of 4

Looking for CG6298-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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