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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6300-RA through 18771 annotations produced 2 hits



/// /// (CG11407 /// CG11659 /// CG6300):

Annotation Number : CG11659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038730 /// FBgn0038731
Gbrowse : chrUextra:11635009-11635755 (-) // 43.58 // /// chr3R:15601194-15603002 (-) // 100.0 // /// chr3R:15597115-15598947 (-) // 98.23 //
Probeset : 1634097_s_at
Accessions : protein= NP_650828; /// NP_650829;, nucleotide= NM_142571; /// NM_142572;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0038730 /// FBgn0038731.
BioGrid reports that CG11659 interacts with CG12470 CG14534 CG2238 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland3 10 of 4 0.13Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2709 3184 of 498.10Up
Hindgut23 20 of 4 0.80None
Heart1 00 of 4 0.07Down
Fat body3 40 of 4 0.12Down
Ovary0 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.06Down
Mated spermatheca1 00 of 4 0.04Down
Adult carcass1 00 of 4 0.00Down
Larval CNS0 00 of 4 0.02Down
Larval Salivary gland1 00 of 4 0.05Down
Larval midgut0 00 of 4 0.02Down
Larval tubule156 574 of 4 5.70None
Larval hindgut15 52 of 4 0.57None
Larval fat body2 10 of 4 0.10Down
Larval trachea2 20 of 4 0.08Down
Larval carcass0 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly27 73 of 4



(CG6300):

Annotation Number : CG6300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038730
Gbrowse : chr3R:15596567-15598897 (-) // 100.0 //
Probeset : 1631835_at
Accessions : protein= NP_650828;, nucleotide= NM_142571;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005324 // long-chain fatty acid transporter ac
FlyMine data for FBgn0038730.
BioGrid reports that CG6300 interacts with CG12470 CG14534 CG2238 .
VDRC has 2 RNAi stocks for FBgn0038730 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 44 of 415.50Up
Head9 23 of 4 1.90None
Eye16 14 of 4 3.33Up
Thoracicoabdominal ganglion128 194 of 425.50Up
Salivary gland13 21 of 4 2.60Up
Crop5 11 of 4 1.10None
Midgut5 11 of 4 1.20None
Tubule5 10 of 4 1.00None
Hindgut4 10 of 4 0.90None
Heart7 03 of 4 1.50None
Fat body10 23 of 4 2.00Up
Ovary2 00 of 4 0.50None
Testis1 00 of 4 0.30Down
Male accessory glands7 21 of 4 1.40None
Virgin spermatheca5 20 of 4 1.04None
Mated spermatheca5 21 of 4 1.17None
Adult carcass18 14 of 4 3.60Up
Larval CNS34 44 of 4 6.85Up
Larval Salivary gland5 10 of 4 1.02None
Larval midgut2 00 of 4 0.49None
Larval tubule3 10 of 4 0.70None
Larval hindgut2 10 of 4 0.58None
Larval fat body2 10 of 4 0.50None
Larval trachea2 10 of 4 0.52None
Larval carcass2 10 of 4 0.45None
S2 cells (growing)3 01 of 4 0.69None
Whole fly5 12 of 4

Looking for CG6300-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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