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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6305-RA through 18771 annotations produced 1 hits



CG6305 (Cpr50Cb):

Annotation Number : CG6305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033869
Gbrowse : chr2R:9682307-9692741 (+) // 100.0 //
Probeset : 1629304_at
Accessions : protein= NP_610901;, nucleotide= NM_137057;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0033869.
BDGP gene expression has embryonic in situ data for CG6305: 12 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0033869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head2 ± 00 of 4 0.80None
Eye17 ± 23 of 4 5.30Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland4 ± 00 of 4 1.46None
Crop1 ± 00 of 4 0.30None
Midgut2 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 0.40Down
Hindgut2 ± 10 of 4 0.60None
Heart1 ± 00 of 4 0.33None
Fat body1 ± 00 of 4 0.47None
Ovary3 ± 10 of 4 0.90None
Testis3 ± 10 of 4 0.90None
Male accessory glands7 ± 10 of 4 2.30None
Virgin spermatheca3 ± 10 of 4 1.08None
Mated spermatheca1 ± 00 of 4 0.56None
Adult carcass7 ± 20 of 4 2.10None
Larval CNS0 ± 00 of 4 0.26None
Larval Salivary gland1 ± 00 of 4 0.40None
Larval midgut1 ± 00 of 4 0.53None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.27None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea0 ± 00 of 4 0.29None
Larval carcass1 ± 00 of 4 0.30None
S2 cells (growing)0 ± 00 of 4 0.26None
Whole fly3 ± 10 of 4

Looking for CG6305-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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