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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6308-RA through 18771 annotations produced 1 hits



(CG6308):

Annotation Number : CG6308
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030645
Gbrowse : chrX:15366275-15366851 (+) // 100.0 //
Probeset : 1640298_at
Accessions : protein= NP_573031;, nucleotide= NM_132803;
FlyMine data for FBgn0030645.
VDRC has 2 RNAi stocks for FBgn0030645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 34 of 4 1.40Up
Head49 24 of 4 1.10None
Eye104 34 of 4 2.32Up
Thoracicoabdominal ganglion55 14 of 4 1.20None
Salivary gland111 134 of 4 2.48Up
Crop67 44 of 4 1.50Up
Midgut51 44 of 4 1.10None
Tubule22 13 of 4 0.50Down
Hindgut61 24 of 4 1.40Up
Heart56 44 of 4 1.25None
Fat body56 64 of 4 1.25None
Ovary61 14 of 4 1.40Up
Testis40 04 of 4 0.90None
Male accessory glands151 34 of 4 3.40Up
Virgin spermatheca21 24 of 4 0.49Down
Mated spermatheca18 43 of 4 0.40Down
Adult carcass65 44 of 4 1.50Up
Larval CNS79 74 of 4 1.77Up
Larval Salivary gland101 24 of 4 2.26Up
Larval midgut35 24 of 4 0.79None
Larval tubule51 24 of 4 1.10None
Larval hindgut41 14 of 4 0.91None
Larval fat body45 54 of 4 1.00None
Larval trachea54 94 of 4 1.21None
Larval carcass46 14 of 4 1.04None
S2 cells (growing)57 24 of 4 1.28Up
Whole fly45 34 of 4

Looking for CG6308-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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