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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6310-RA through 18771 annotations produced 1 hits



(CG6310):

Annotation Number : CG6310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036121
Gbrowse : chr3L:11062150-11062953 (-) // 98.82 //
Probeset : 1637269_at
Accessions : protein= NP_648429;, nucleotide= NM_140172;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036121.
VDRC has 2 RNAi stocks for FBgn0036121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 24 of 4 0.90None
Head53 44 of 4 1.30None
Eye22 04 of 4 0.54Down
Thoracicoabdominal ganglion33 24 of 4 0.80None
Salivary gland8 20 of 4 0.20Down
Crop163 34 of 4 3.90Up
Midgut30 14 of 4 0.70Down
Tubule11 12 of 4 0.30Down
Hindgut65 44 of 4 1.60Up
Heart280 64 of 4 6.74Up
Fat body48 54 of 4 1.17None
Ovary47 24 of 4 1.10None
Testis30 34 of 4 0.70Down
Male accessory glands36 44 of 4 0.90None
Virgin spermatheca7 10 of 4 0.17Down
Mated spermatheca10 23 of 4 0.26Down
Adult carcass55 34 of 4 1.30Up
Larval CNS102 234 of 4 2.46Up
Larval Salivary gland11 12 of 4 0.28Down
Larval midgut82 114 of 4 1.99Up
Larval tubule81 74 of 4 1.90Up
Larval hindgut59 74 of 4 1.44None
Larval fat body40 44 of 4 1.00None
Larval trachea287 274 of 4 6.89Up
Larval carcass139 124 of 4 3.34Up
S2 cells (growing)1648 384 of 439.55Up
Whole fly41 24 of 4

Looking for CG6310-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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