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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6311-RB through 18771 annotations produced 1 hits



CG6311 (Edc3):

Annotation Number : CG6311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036735
Gbrowse : chr3L:17518430-17522976 (-) // 100.0 //
Probeset : 1641685_at
Accessions : protein= NP_648992;, nucleotide= NM_140735;
Pathway : 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0000932 // cytoplasmic mRNA processing bod
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036735.
BioGrid reports that CG6311 interacts with CG9675 .
TRiP has 2 RNAi stocks for FBgn0036735 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036735 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 114 of 4 2.80Up
Head72 24 of 4 1.20Up
Eye114 114 of 4 1.84Up
Thoracicoabdominal ganglion105 64 of 4 1.70Up
Salivary gland119 104 of 4 1.91Up
Crop113 54 of 4 1.80Up
Midgut71 14 of 4 1.10Up
Tubule62 14 of 4 1.00None
Hindgut106 34 of 4 1.70Up
Heart94 64 of 4 1.52Up
Fat body106 114 of 4 1.72Up
Ovary143 14 of 4 2.30Up
Testis19 04 of 4 0.30Down
Male accessory glands105 104 of 4 1.70Up
Virgin spermatheca139 64 of 4 2.25Up
Mated spermatheca127 104 of 4 2.04Up
Adult carcass59 14 of 4 1.00None
Larval CNS179 224 of 4 2.88Up
Larval Salivary gland144 64 of 4 2.32Up
Larval midgut64 84 of 4 1.04None
Larval tubule88 34 of 4 1.40Up
Larval hindgut105 74 of 4 1.70Up
Larval fat body59 14 of 4 1.00None
Larval trachea128 134 of 4 2.07Up
Larval carcass86 44 of 4 1.39Up
S2 cells (growing)116 34 of 4 1.87Up
Whole fly62 24 of 4

Looking for CG6311-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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