FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6321-RA through 18771 annotations produced 1 hits

(CG6321):

Annotation Number : CG6321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036117
Gbrowse : chr3L:11052540-11054319 (-) // 100.0 //
Probeset : 1623864_at
Accessions : protein= NP_648426;, nucleotide= NM_140169;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred fr
FlyMine data for FBgn0036117.
BDGP gene expression has embryonic in situ data for CG6321: 11 pix of staining in 5 body parts.
VDRC has 4 RNAi stocks for FBgn0036117 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 2	4 of 4	0.10	Down
Head	85 ± 4	4 of 4	0.60	Down
Eye	52 ± 7	4 of 4	0.37	Down
Thoracicoabdominal ganglion	22 ± 2	4 of 4	0.20	Down
Salivary gland	46 ± 2	4 of 4	0.32	Down
Crop	86 ± 3	4 of 4	0.60	Down
Midgut	148 ± 5	4 of 4	1.00	None
Tubule	1597 ± 142	4 of 4	11.10	Up
Hindgut	103 ± 4	4 of 4	0.70	Down
Heart	118 ± 7	4 of 4	0.82	None
Fat body	151 ± 20	4 of 4	1.05	None
Ovary	180 ± 2	4 of 4	1.30	Up
Testis	177 ± 6	4 of 4	1.20	Up
Male accessory glands	33 ± 1	4 of 4	0.20	Down
Virgin spermatheca	202 ± 2	4 of 4	1.41	Up
Mated spermatheca	274 ± 28	4 of 4	1.91	Up
Adult carcass	121 ± 3	4 of 4	0.80	None
Larval CNS	40 ± 4	4 of 4	0.28	Down
Larval Salivary gland	41 ± 1	4 of 4	0.29	Down
Larval midgut	100 ± 5	4 of 4	0.70	Down
Larval tubule	222 ± 22	4 of 4	1.50	Up
Larval hindgut	60 ± 1	4 of 4	0.42	Down
Larval fat body	76 ± 11	4 of 4	0.50	Down
Larval trachea	27 ± 4	4 of 4	0.19	Down
Larval carcass	46 ± 3	4 of 4	0.33	Down
S2 cells (growing)	69 ± 0	4 of 4	0.48	Down
Whole fly	143 ± 9	4 of 4

Looking for CG6321-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720