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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6330-RB through 18771 annotations produced 1 hits



(CG6330):

Annotation Number : CG6330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039464
Gbrowse : chr3R:22775844-22784209 (-) // 100.0 //
Probeset : 1640363_a_at
Accessions : protein= NP_651515; /// NP_733175;, nucleotide= NM_143258; /// NM_170296;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004850 // uridine phosphorylase activity // i
FlyMine data for FBgn0039464.
VDRC has 2 RNAi stocks for FBgn0039464 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain636 ± 204 of 4 3.80Up
Head483 ± 434 of 4 2.90Up
Eye191 ± 164 of 4 1.15None
Thoracicoabdominal ganglion864 ± 554 of 4 5.20Up
Salivary gland24 ± 42 of 4 0.15Down
Crop41 ± 24 of 4 0.20Down
Midgut64 ± 44 of 4 0.40Down
Tubule16 ± 32 of 4 0.10Down
Hindgut32 ± 34 of 4 0.20Down
Heart191 ± 144 of 4 1.15None
Fat body244 ± 394 of 4 1.47Up
Ovary170 ± 14 of 4 1.00None
Testis93 ± 14 of 4 0.60Down
Male accessory glands731 ± 404 of 4 4.40Up
Virgin spermatheca446 ± 244 of 4 2.68Up
Mated spermatheca239 ± 234 of 4 1.44None
Adult carcass273 ± 64 of 4 1.60Up
Larval CNS270 ± 314 of 4 1.62Up
Larval Salivary gland1104 ± 764 of 4 6.62Up
Larval midgut171 ± 204 of 4 1.03None
Larval tubule101 ± 164 of 4 0.60Down
Larval hindgut105 ± 84 of 4 0.63Down
Larval fat body42 ± 74 of 4 0.30Down
Larval trachea39 ± 74 of 4 0.24Down
Larval carcass468 ± 854 of 4 2.81Up
S2 cells (growing)484 ± 304 of 4 2.90Up
Whole fly166 ± 24 of 4

Looking for CG6330-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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