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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6337-RA through 18771 annotations produced 1 hits


Annotation Number : CG6337
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033873
Gbrowse : chr2R:9721358-9722593 (-) // 100.0 //
Probeset : 1633749_at
Accessions : protein= NP_610905;, nucleotide= NM_137061;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0008234 // cystei
FlyMine data for FBgn0033873.
BDGP gene expression has embryonic in situ data for CG6337: 12 pix of staining in 3 body parts.
Homophila reports that CG6337 is a close match (1e-14) to human gene CTSK (NP_000387), a gene associated with Pycnodysostosis, 265800 (3).
BioGrid reports that CG6337 interacts with CG6357 CG9930 .
VDRC has 2 RNAi stocks for FBgn0033873 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.10Down
Head2 10 of 4 0.00Down
Eye4 20 of 4 0.05Down
Thoracicoabdominal ganglion8 30 of 4 0.10Down
Salivary gland11 40 of 4 0.15Down
Crop5 10 of 4 0.10Down
Midgut75 172 of 4 1.00None
Tubule636 1904 of 4 8.00Up
Hindgut3147 884 of 439.70Up
Heart4 21 of 4 0.06Down
Fat body10 161 of 4 0.13Down
Ovary2 00 of 4 0.00Down
Testis4 10 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.03Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass4 10 of 4 0.10Down
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland3 20 of 4 0.05Down
Larval midgut7 40 of 4 0.10Down
Larval tubule1154 1024 of 414.60Up
Larval hindgut1793 724 of 422.64Up
Larval fat body3 10 of 4 0.00Down
Larval trachea1 00 of 4 0.02Down
Larval carcass3 10 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly79 104 of 4

Looking for CG6337-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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