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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6341-RA through 18771 annotations produced 1 hits



Elongation factor 1 beta (Ef1beta):

Annotation Number : CG6341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028737
Gbrowse : chr2R:12755697-12756681 (+) // 100.0 //
Probeset : 1634095_at
Accessions : protein= NP_524808;, nucleotide= NM_080069;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural s
Interpro : 0003746 // translation elongation factor activity // inferred from electronic annotation /// 0003746 // translation elon
FlyMine data for FBgn0028737.
BDGP gene expression has embryonic in situ data for Ef1beta: 4 pix of staining in 1 body parts.
BioGrid reports that CG6341 interacts with CG8764 .
VDRC has 3 RNAi stocks for FBgn0028737 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1069 ± 214 of 4 0.40Down
Head2985 ± 1294 of 4 1.00None
Eye3160 ± 994 of 4 1.05None
Thoracicoabdominal ganglion1995 ± 274 of 4 0.70Down
Salivary gland4273 ± 484 of 4 1.42Up
Crop3893 ± 974 of 4 1.30Up
Midgut3150 ± 404 of 4 1.00None
Tubule3898 ± 984 of 4 1.30Up
Hindgut3020 ± 614 of 4 1.00None
Heart4557 ± 3164 of 4 1.51Up
Fat body4098 ± 3224 of 4 1.36Up
Ovary2826 ± 204 of 4 0.90None
Testis803 ± 154 of 4 0.30Down
Male accessory glands4281 ± 1714 of 4 1.40Up
Virgin spermatheca5513 ± 1894 of 4 1.83Up
Mated spermatheca5662 ± 1844 of 4 1.88Up
Adult carcass3742 ± 1884 of 4 1.20Up
Larval CNS2084 ± 1294 of 4 0.69Down
Larval Salivary gland6105 ± 1904 of 4 2.03Up
Larval midgut2946 ± 724 of 4 0.98None
Larval tubule3636 ± 644 of 4 1.20Up
Larval hindgut3415 ± 594 of 4 1.13Up
Larval fat body6155 ± 6554 of 4 2.00Up
Larval trachea4700 ± 1354 of 4 1.56Up
Larval carcass3923 ± 2264 of 4 1.30Up
S2 cells (growing)3986 ± 804 of 4 1.32Up
Whole fly3011 ± 1174 of 4

Looking for CG6341-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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