Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6345-RA through 18771 annotations produced 1 hits



(CG6345):

Annotation Number : CG6345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037816
Gbrowse : chr3R:6239368-6241766 (-) // 100.0 //
Probeset : 1628790_at
Accessions : protein= NP_650002;, nucleotide= NM_141745;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred fr
FlyMine data for FBgn0037816.
BDGP gene expression has embryonic in situ data for CG6345: 13 pix of staining in 17 body parts.
Homophila reports that CG6345 is a close match (5e-32) to human gene CDKAL1 (NP_060244), a gene associated with {Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3).
VDRC has 3 RNAi stocks for FBgn0037816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.70None
Head3 ± 00 of 4 1.00None
Eye1 ± 00 of 4 0.36None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland7 ± 20 of 4 2.00None
Crop4 ± 10 of 4 1.10None
Midgut3 ± 10 of 4 0.80None
Tubule2 ± 00 of 4 0.50Down
Hindgut2 ± 00 of 4 0.70None
Heart5 ± 20 of 4 1.46None
Fat body5 ± 20 of 4 1.42None
Ovary4 ± 10 of 4 1.10None
Testis3 ± 00 of 4 0.90None
Male accessory glands11 ± 01 of 4 3.10Up
Virgin spermatheca3 ± 10 of 4 0.94None
Mated spermatheca5 ± 10 of 4 1.41None
Adult carcass8 ± 20 of 4 2.30None
Larval CNS8 ± 23 of 4 2.18None
Larval Salivary gland9 ± 10 of 4 2.61Up
Larval midgut5 ± 10 of 4 1.51None
Larval tubule3 ± 10 of 4 0.80None
Larval hindgut3 ± 00 of 4 0.95None
Larval fat body5 ± 20 of 4 1.40None
Larval trachea8 ± 41 of 4 2.26None
Larval carcass6 ± 20 of 4 1.78None
S2 cells (growing)4 ± 00 of 4 1.14None
Whole fly3 ± 10 of 4

Looking for CG6345-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime