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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6357-RA through 18771 annotations produced 1 hits



(CG6357):

Annotation Number : CG6357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033875
Gbrowse : chr2R:9727580-9729248 (+) // 100.0 //
Probeset : 1633059_at
Accessions : protein= NP_610907;, nucleotide= NM_137063;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0016787 // hydrol
FlyMine data for FBgn0033875.
BDGP gene expression has embryonic in situ data for CG6357: 4 pix of staining in 1 body parts.
BioGrid reports that CG6357 interacts with CG7658 CG9757 CG6620 CG6841 CG7111 CG7449 CG8049 CG9149 .
VDRC has 1 RNAi stocks for FBgn0033875 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain620 ± 354 of 4 2.30Up
Head710 ± 694 of 4 2.70Up
Eye470 ± 464 of 4 1.77Up
Thoracicoabdominal ganglion1085 ± 364 of 4 4.10Up
Salivary gland686 ± 494 of 4 2.59Up
Crop438 ± 134 of 4 1.70Up
Midgut469 ± 244 of 4 1.80Up
Tubule682 ± 734 of 4 2.60Up
Hindgut466 ± 264 of 4 1.80Up
Heart913 ± 604 of 4 3.44Up
Fat body1307 ± 1084 of 4 4.93Up
Ovary145 ± 44 of 4 0.50Down
Testis331 ± 154 of 4 1.20None
Male accessory glands697 ± 304 of 4 2.60Up
Virgin spermatheca1803 ± 824 of 4 6.80Up
Mated spermatheca2046 ± 1024 of 4 7.71Up
Adult carcass511 ± 134 of 4 1.90Up
Larval CNS277 ± 564 of 4 1.05None
Larval Salivary gland47 ± 173 of 4 0.18Down
Larval midgut202 ± 174 of 4 0.76None
Larval tubule427 ± 294 of 4 1.60Up
Larval hindgut153 ± 174 of 4 0.58Down
Larval fat body690 ± 714 of 4 2.60Up
Larval trachea33 ± 64 of 4 0.13Down
Larval carcass96 ± 84 of 4 0.36Down
S2 cells (growing)65 ± 54 of 4 0.25Down
Whole fly265 ± 274 of 4

Looking for CG6357-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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