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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6361-RA through 18771 annotations produced 1 hits



(CG6361):

Annotation Number : CG6361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030925
Gbrowse : chrX:18374134-18377778 (-) // 100.0 //
Probeset : 1640521_at
Accessions : protein= NP_001097020; /// NP_573296;, nucleotide= NM_001103550; /// NM_133068;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030925.
BDGP gene expression has embryonic in situ data for CG6361: 17 pix of staining in 11 body parts.
Homophila reports that CG6361 is a close match (2e-12) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 1 RNAi stocks for FBgn0030925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.30Down
Head64 ± 44 of 4 3.80Up
Eye24 ± 34 of 4 1.42None
Thoracicoabdominal ganglion6 ± 11 of 4 0.40Down
Salivary gland18 ± 30 of 4 1.08None
Crop133 ± 94 of 4 7.90Up
Midgut8 ± 20 of 4 0.50Down
Tubule7 ± 00 of 4 0.40Down
Hindgut56 ± 54 of 4 3.30Up
Heart35 ± 24 of 4 2.09Up
Fat body155 ± 184 of 4 9.13Up
Ovary4 ± 00 of 4 0.30Down
Testis4 ± 00 of 4 0.30Down
Male accessory glands7 ± 20 of 4 0.40Down
Virgin spermatheca118 ± 54 of 4 6.98Up
Mated spermatheca73 ± 64 of 4 4.30Up
Adult carcass94 ± 44 of 4 5.60Up
Larval CNS4 ± 11 of 4 0.28Down
Larval Salivary gland25 ± 33 of 4 1.48None
Larval midgut4 ± 10 of 4 0.29Down
Larval tubule4 ± 10 of 4 0.30Down
Larval hindgut106 ± 34 of 4 6.23Up
Larval fat body486 ± 314 of 428.60Up
Larval trachea100 ± 04 of 4 5.90Up
Larval carcass119 ± 134 of 4 7.00Up
S2 cells (growing)7 ± 10 of 4 0.41Down
Whole fly17 ± 24 of 4

Looking for CG6361-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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