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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6369-RA through 18771 annotations produced 1 hits



Smg6 (Smg6):

Annotation Number : CG6369
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039260
Gbrowse : chr3R:20855144-20859177 (-) // 100.0 //
Probeset : 1632464_at
Accessions : protein= NP_651321;, nucleotide= NM_143064;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0016246 // RNA interference // inferred from mutant pheno
FlyMine data for FBgn0039260.
VDRC has 3 RNAi stocks for FBgn0039260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain421 ± 114 of 4 2.00Up
Head268 ± 134 of 4 1.30Up
Eye229 ± 54 of 4 1.07None
Thoracicoabdominal ganglion441 ± 134 of 4 2.10Up
Salivary gland411 ± 134 of 4 1.92Up
Crop369 ± 184 of 4 1.70Up
Midgut199 ± 74 of 4 0.90None
Tubule673 ± 214 of 4 3.10Up
Hindgut259 ± 24 of 4 1.20None
Heart224 ± 34 of 4 1.05None
Fat body244 ± 234 of 4 1.14None
Ovary275 ± 44 of 4 1.30Up
Testis339 ± 194 of 4 1.60Up
Male accessory glands332 ± 44 of 4 1.50Up
Virgin spermatheca463 ± 274 of 4 2.16Up
Mated spermatheca473 ± 134 of 4 2.20Up
Adult carcass301 ± 154 of 4 1.40Up
Larval CNS261 ± 114 of 4 1.22Up
Larval Salivary gland419 ± 174 of 4 1.95Up
Larval midgut138 ± 44 of 4 0.64Down
Larval tubule255 ± 134 of 4 1.20None
Larval hindgut196 ± 104 of 4 0.91None
Larval fat body180 ± 264 of 4 0.80None
Larval trachea268 ± 314 of 4 1.25Up
Larval carcass211 ± 104 of 4 0.99None
S2 cells (growing)253 ± 54 of 4 1.18None
Whole fly214 ± 144 of 4

Looking for CG6369-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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