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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6378-RA through 18771 annotations produced 1 hits



BM-40-SPARC (BM-40-SPARC):

Annotation Number : CG6378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026562
Gbrowse : chr3R:22694953-22697738 (-) // 100.0 //
Probeset : 1625825_at
Accessions : protein= NP_651509;, nucleotide= NM_143252;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005578 // proteinaceous extrac
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0026562.
BDGP gene expression has embryonic in situ data for BM-40-SPARC: 16 pix of staining in 4 body parts.
BioGrid reports that CG6378 interacts with CG8841 CG6770 CG6779 CG7808 CG8882 CG9723 .
TRiP has 1 RNAi stocks for FBgn0026562 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026562 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1475 354 of 4 2.30Up
Head2146 204 of 4 3.30Up
Eye1472 1604 of 4 2.28Up
Thoracicoabdominal ganglion2285 224 of 4 3.50Up
Salivary gland51 83 of 4 0.08Down
Crop1089 454 of 4 1.70Up
Midgut129 44 of 4 0.20Down
Tubule52 84 of 4 0.10Down
Hindgut404 44 of 4 0.60Down
Heart3974 2164 of 4 6.16Up
Fat body3933 4494 of 4 6.10Up
Ovary95 14 of 4 0.10Down
Testis122 24 of 4 0.20Down
Male accessory glands727 284 of 4 1.10None
Virgin spermatheca3016 2124 of 4 4.68Up
Mated spermatheca3406 714 of 4 5.28Up
Adult carcass2958 474 of 4 4.60Up
Larval CNS209 174 of 4 0.32Down
Larval Salivary gland127 114 of 4 0.20Down
Larval midgut42 44 of 4 0.07Down
Larval tubule65 134 of 4 0.10Down
Larval hindgut515 474 of 4 0.80None
Larval fat body4102 3294 of 4 6.40Up
Larval trachea284 354 of 4 0.44Down
Larval carcass552 154 of 4 0.86Down
S2 cells (growing)4142 774 of 4 6.42Up
Whole fly644 284 of 4

Looking for CG6378-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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