Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6382-RA through 18771 annotations produced 1 hits



eukaryotic release factor 3 (Elf):

Annotation Number : CG6382
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020443
Gbrowse : chr2L:12434431-12440605 (+) // 100.0 //
Probeset : 1640557_at
Accessions : protein= NP_477259;, nucleotide= NM_057911;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // non-traceable author sta
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activi
FlyMine data for FBgn0020443.
BDGP gene expression has embryonic in situ data for Elf: 11 pix of staining in 18 body parts.
Homophila reports that CG6382 is a close match (4e-21) to human gene COXPD4;EFTU;TUFM (NP_003312), a gene associated with Combined oxidative phosphorylation deficiency 4, 610678 (3).
BioGrid reports that CG6382 interacts with CG7281 .
TRiP has 1 RNAi stocks for FBgn0020443 available for purchase.
VDRC has 1 RNAi stocks for FBgn0020443 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 84 of 4 0.20Down
Head395 44 of 4 0.50Down
Eye284 174 of 4 0.36Down
Thoracicoabdominal ganglion226 104 of 4 0.30Down
Salivary gland1252 474 of 4 1.60Up
Crop622 144 of 4 0.80Down
Midgut633 194 of 4 0.80Down
Tubule693 714 of 4 0.90None
Hindgut752 194 of 4 1.00None
Heart617 74 of 4 0.79Down
Fat body957 794 of 4 1.22Up
Ovary1431 224 of 4 1.80Up
Testis420 104 of 4 0.50Down
Male accessory glands1591 504 of 4 2.00Up
Virgin spermatheca695 224 of 4 0.89None
Mated spermatheca856 174 of 4 1.09None
Adult carcass598 74 of 4 0.80Down
Larval CNS716 284 of 4 0.91None
Larval Salivary gland2686 1934 of 4 3.43Up
Larval midgut713 594 of 4 0.91None
Larval tubule981 354 of 4 1.30Up
Larval hindgut1142 404 of 4 1.46Up
Larval fat body936 354 of 4 1.20Up
Larval trachea1157 1224 of 4 1.48Up
Larval carcass1039 664 of 4 1.32Up
S2 cells (growing)951 124 of 4 1.21Up
Whole fly784 444 of 4

Looking for CG6382-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime