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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6388-RA through 18771 annotations produced 1 hits



(CG6388):

Annotation Number : CG6388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032430
Gbrowse : chr2L:12428031-12430031 (+) // 100.0 //
Probeset : 1636003_at
Accessions : protein= NP_609566;, nucleotide= NM_135722;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004809 // tRNA (guanine-N2-)-methyltransferase activi
FlyMine data for FBgn0032430.
BDGP gene expression has embryonic in situ data for CG6388: 10 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0032430 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 44 of 4 0.60Down
Head91 ± 24 of 4 0.80Down
Eye63 ± 14 of 4 0.56Down
Thoracicoabdominal ganglion77 ± 94 of 4 0.70Down
Salivary gland142 ± 94 of 4 1.25None
Crop167 ± 44 of 4 1.50Up
Midgut98 ± 54 of 4 0.90None
Tubule98 ± 74 of 4 0.90None
Hindgut98 ± 74 of 4 0.90None
Heart93 ± 64 of 4 0.82None
Fat body111 ± 164 of 4 0.97None
Ovary146 ± 64 of 4 1.30Up
Testis16 ± 13 of 4 0.10Down
Male accessory glands183 ± 74 of 4 1.60Up
Virgin spermatheca75 ± 14 of 4 0.66Down
Mated spermatheca95 ± 54 of 4 0.83None
Adult carcass108 ± 103 of 4 0.90None
Larval CNS141 ± 114 of 4 1.24Up
Larval Salivary gland161 ± 94 of 4 1.42Up
Larval midgut98 ± 64 of 4 0.86None
Larval tubule83 ± 64 of 4 0.70Down
Larval hindgut141 ± 64 of 4 1.24Up
Larval fat body65 ± 84 of 4 0.60Down
Larval trachea245 ± 174 of 4 2.15Up
Larval carcass191 ± 154 of 4 1.67Up
S2 cells (growing)290 ± 44 of 4 2.54Up
Whole fly114 ± 74 of 4

Looking for CG6388-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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