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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6426-RA through 18771 annotations produced 1 hits



(CG6426):

Annotation Number : CG6426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034162
Gbrowse : chr2R:12756896-12759359 (+) // 100.0 //
Probeset : 1634636_at
Accessions : protein= NP_611163;, nucleotide= NM_137319;
Interpro : 0003796 // lysozyme activity // inferred from electronic annotation
FlyMine data for FBgn0034162.
BDGP gene expression has embryonic in situ data for CG6426: 8 pix of staining in 1 body parts.
BioGrid reports that CG6426 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0034162 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 24 of 4 0.20Down
Head1532 824 of 4 4.00Up
Eye919 944 of 4 2.39Up
Thoracicoabdominal ganglion44 34 of 4 0.10Down
Salivary gland56 34 of 4 0.15Down
Crop606 124 of 4 1.60Up
Midgut26 24 of 4 0.10Down
Tubule62 54 of 4 0.20Down
Hindgut1329 234 of 4 3.50Up
Heart1983 934 of 4 5.17Up
Fat body2172 1924 of 4 5.66Up
Ovary7 03 of 4 0.00Down
Testis39 44 of 4 0.10Down
Male accessory glands21 13 of 4 0.10Down
Virgin spermatheca6367 2364 of 416.58Up
Mated spermatheca6626 2024 of 417.26Up
Adult carcass2082 684 of 4 5.40Up
Larval CNS30 54 of 4 0.08Down
Larval Salivary gland22 44 of 4 0.06Down
Larval midgut18 14 of 4 0.05Down
Larval tubule11 22 of 4 0.00Down
Larval hindgut556 324 of 4 1.45Up
Larval fat body404 1234 of 4 1.10None
Larval trachea1948 3574 of 4 5.08Up
Larval carcass2612 1224 of 4 6.81Up
S2 cells (growing)11 04 of 4 0.03Down
Whole fly383 194 of 4

Looking for CG6426-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime