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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6429-RA through 18771 annotations produced 1 hits



(CG6429):

Annotation Number : CG6429
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046999
Gbrowse : chr2R:12760521-12761266 (+) // 100.0 //
Probeset : 1641698_at
Accessions : protein= NP_611164;, nucleotide= NM_137320;
Interpro : 0003796 // lysozyme activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phys
FlyMine data for FBgn0046999.
BioGrid reports that CG6429 interacts with CG8997 CG9911 .
VDRC has 3 RNAi stocks for FBgn0046999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 0.10Down
Head401 ± 104 of 4 7.00Up
Eye728 ± 444 of 412.77Up
Thoracicoabdominal ganglion9 ± 13 of 4 0.20Down
Salivary gland10 ± 40 of 4 0.18Down
Crop166 ± 124 of 4 2.90Up
Midgut10 ± 22 of 4 0.20Down
Tubule4 ± 20 of 4 0.10Down
Hindgut10 ± 14 of 4 0.20Down
Heart20 ± 24 of 4 0.36Down
Fat body18 ± 64 of 4 0.32Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 01 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca14 ± 14 of 4 0.26Down
Mated spermatheca53 ± 84 of 4 0.93None
Adult carcass379 ± 164 of 4 6.60Up
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut6 ± 11 of 4 0.11Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.04Down
Larval fat body4 ± 20 of 4 0.10Down
Larval trachea10 ± 171 of 4 0.18Down
Larval carcass27 ± 114 of 4 0.48None
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly57 ± 44 of 4

Looking for CG6429-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime