Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6434-RA through 18771 annotations produced 2 hits



(CG6434):

Annotation Number : CG6434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036972
Gbrowse : chr3L:20315476-20316309 (-) // 100.0 //
Probeset : 1622978_at
Accessions : protein= NP_649208;, nucleotide= NM_140951;
FlyMine data for FBgn0036972.
VDRC has 2 RNAi stocks for FBgn0036972 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.40None
Crop2 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.05Down
Fat body2 ± 10 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis7 ± 23 of 4 0.40None
Male accessory glands76 ± 134 of 4 4.10Up
Virgin spermatheca2 ± 11 of 4 0.12Down
Mated spermatheca3 ± 10 of 4 0.17Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland0 ± 00 of 4 0.02Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 11 of 4 0.13Down
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea1 ± 10 of 4 0.09Down
Larval carcass0 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly18 ± 34 of 4



/// (CG5585 /// CG6434):

Annotation Number : CG6434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036972 /// FBgn0036973
Gbrowse : chr3L:20315476-20316309 (-) // 100.0 //
Probeset : 1626046_s_at
Accessions : protein= NP_649208; /// NP_649209;, nucleotide= NM_140951; /// NM_140952;
FlyMine data for FBgn0036972 /// FBgn0036973.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 14 of 4 1.10None
Head22 ± 24 of 4 0.60Down
Eye24 ± 14 of 4 0.66Down
Thoracicoabdominal ganglion23 ± 24 of 4 0.60Down
Salivary gland20 ± 42 of 4 0.56Down
Crop35 ± 24 of 4 0.90None
Midgut21 ± 24 of 4 0.60Down
Tubule11 ± 12 of 4 0.30Down
Hindgut27 ± 04 of 4 0.70Down
Heart18 ± 24 of 4 0.50Down
Fat body18 ± 43 of 4 0.48Down
Ovary52 ± 14 of 4 1.40Up
Testis49 ± 24 of 4 1.30Up
Male accessory glands18 ± 30 of 4 0.50Down
Virgin spermatheca9 ± 01 of 4 0.26Down
Mated spermatheca5 ± 00 of 4 0.16Down
Adult carcass18 ± 23 of 4 0.50Down
Larval CNS60 ± 44 of 4 1.63Up
Larval Salivary gland23 ± 14 of 4 0.64Down
Larval midgut13 ± 02 of 4 0.35Down
Larval tubule35 ± 34 of 4 0.90None
Larval hindgut17 ± 14 of 4 0.48Down
Larval fat body40 ± 34 of 4 1.10None
Larval trachea42 ± 24 of 4 1.15None
Larval carcass17 ± 04 of 4 0.48Down
S2 cells (growing)41 ± 24 of 4 1.11None
Whole fly37 ± 24 of 4

Looking for CG6434-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime