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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6446-RA through 18771 annotations produced 1 hits



semiphorin (Sema-1b):

Annotation Number : CG6446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016059
Gbrowse : chr2R:13560341-13571000 (-) // 100.0 //
Probeset : 1636281_at
Accessions : protein= NP_001163178; /// NP_611244; /// NP_995879;, nucleotide= NM_001169707; /// NM_137400; /// NM_206157;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0004872 // receptor activity // inferred from electronic annotation
FlyMine data for FBgn0016059.
Homophila reports that CG6446 is a close match (2e-54) to human gene CORD10;RP35;SEMA4A;SEMB (NP_071762), a gene associated with Cone-rod dystrophy 10, 610283 (3);Retinitis pigmentosa 35, 610282 (3).
BioGrid reports that CG6446 interacts with CG8440 .
TRiP has 1 RNAi stocks for FBgn0016059 available for purchase.
VDRC has 1 RNAi stocks for FBgn0016059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain245 94 of 4 1.60None
Head215 204 of 4 1.40None
Eye266 64 of 4 1.71Up
Thoracicoabdominal ganglion121 104 of 4 0.80None
Salivary gland568 314 of 4 3.65Up
Crop350 234 of 4 2.30Up
Midgut99 24 of 4 0.60None
Tubule80 44 of 4 0.50Down
Hindgut400 254 of 4 2.60Up
Heart173 134 of 4 1.11None
Fat body147 174 of 4 0.95None
Ovary177 54 of 4 1.10None
Testis88 44 of 4 0.60None
Male accessory glands190 54 of 4 1.20None
Virgin spermatheca282 134 of 4 1.81Up
Mated spermatheca345 334 of 4 2.22Up
Adult carcass127 94 of 4 0.80None
Larval CNS583 224 of 4 3.75Up
Larval Salivary gland256 134 of 4 1.65Up
Larval midgut94 64 of 4 0.61None
Larval tubule52 44 of 4 0.30Down
Larval hindgut266 234 of 4 1.71Up
Larval fat body263 244 of 4 1.70Up
Larval trachea613 384 of 4 3.94Up
Larval carcass297 234 of 4 1.91Up
S2 cells (growing)629 244 of 4 4.05Up
Whole fly155 314 of 4

Looking for CG6446-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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