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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6450-RC through 18771 annotations produced 1 hits



Lava Lamp (lva):

Annotation Number : CG6450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029688
Gbrowse : chrX:3849907-3858787 (-) // 100.0 //
Probeset : 1635954_at
Accessions : protein= NP_525064;, nucleotide= NM_080325;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // non-traceable author statemen
Interpro : 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interact
FlyMine data for FBgn0029688.
BioGrid reports that CG6450 interacts with CG7793 CG9480 Dmel CR31838 .
VDRC has 2 RNAi stocks for FBgn0029688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 ± 94 of 4 1.60Up
Head97 ± 64 of 4 1.30Up
Eye113 ± 34 of 4 1.53Up
Thoracicoabdominal ganglion112 ± 44 of 4 1.50Up
Salivary gland559 ± 304 of 4 7.58Up
Crop125 ± 74 of 4 1.70Up
Midgut70 ± 24 of 4 0.90None
Tubule80 ± 14 of 4 1.10Up
Hindgut69 ± 54 of 4 0.90None
Heart74 ± 14 of 4 1.01None
Fat body80 ± 164 of 4 1.09None
Ovary96 ± 34 of 4 1.30Up
Testis37 ± 14 of 4 0.50Down
Male accessory glands424 ± 274 of 4 5.70Up
Virgin spermatheca82 ± 134 of 4 1.12None
Mated spermatheca106 ± 144 of 4 1.44None
Adult carcass85 ± 64 of 4 1.20None
Larval CNS72 ± 24 of 4 0.98None
Larval Salivary gland520 ± 234 of 4 7.04Up
Larval midgut81 ± 24 of 4 1.11None
Larval tubule108 ± 54 of 4 1.50Up
Larval hindgut105 ± 24 of 4 1.43Up
Larval fat body80 ± 24 of 4 1.10None
Larval trachea90 ± 74 of 4 1.22None
Larval carcass72 ± 44 of 4 0.98None
S2 cells (growing)118 ± 64 of 4 1.61Up
Whole fly73 ± 54 of 4

Looking for CG6450-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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