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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6456-RA through 18771 annotations produced 1 hits



drostatin-B2 (Mip):

Annotation Number : CG6456
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036713
Gbrowse : chr3L:17338046-17342751 (-) // 100.0 //
Probeset : 1638305_at
Accessions : protein= NP_648971;, nucleotide= NM_140714;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005102 // receptor binding // inferred from direct assay /// 0005179 // hormone activity // inferred from direct assay
FlyMine data for FBgn0036713.
BDGP gene expression has embryonic in situ data for MIP: 20 pix of staining in 3 body parts.
TRiP has 2 RNAi stocks for FBgn0036713 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036713 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain742 394 of 425.20Up
Head260 174 of 4 8.80Up
Eye18 34 of 4 0.61Down
Thoracicoabdominal ganglion196 64 of 4 6.60Up
Salivary gland9 31 of 4 0.32Down
Crop6 01 of 4 0.20Down
Midgut39 34 of 4 1.30Up
Tubule5 10 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart2 11 of 4 0.10Down
Fat body4 20 of 4 0.15Down
Ovary4 00 of 4 0.10Down
Testis12 24 of 4 0.40Down
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca4 00 of 4 0.16Down
Mated spermatheca4 10 of 4 0.14Down
Adult carcass14 23 of 4 0.50Down
Larval CNS222 334 of 4 7.53Up
Larval Salivary gland8 21 of 4 0.27Down
Larval midgut372 104 of 412.62Up
Larval tubule7 11 of 4 0.30Down
Larval hindgut6 02 of 4 0.23Down
Larval fat body5 21 of 4 0.20Down
Larval trachea5 22 of 4 0.17Down
Larval carcass12 14 of 4 0.43Down
S2 cells (growing)6 00 of 4 0.23Down
Whole fly29 24 of 4

Looking for CG6456-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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