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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6460-RA through 18771 annotations produced 1 hits



CG6460 (TwdlK):

Annotation Number : CG6460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039439
Gbrowse : chr3R:22455719-22456294 (+) // 74.73 // /// chr3R:22453685-22454429 (-) // 100.0 //
Probeset : 1629531_at
Accessions : protein= NP_651488;, nucleotide= NM_143231;
FlyMine data for FBgn0039439.
VDRC has 5 RNAi stocks for FBgn0039439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.50None
Head4 ± 00 of 4 0.30None
Eye5 ± 10 of 4 0.41None
Thoracicoabdominal ganglion15 ± 30 of 4 1.10None
Salivary gland30 ± 50 of 4 2.23Up
Crop11 ± 20 of 4 0.80None
Midgut45 ± 60 of 4 3.30Up
Tubule10 ± 00 of 4 0.80Down
Hindgut14 ± 50 of 4 1.10None
Heart2 ± 10 of 4 0.19Down
Fat body15 ± 100 of 4 1.17None
Ovary8 ± 10 of 4 0.60None
Testis6 ± 10 of 4 0.50None
Male accessory glands17 ± 30 of 4 1.30None
Virgin spermatheca22 ± 11 of 4 1.66None
Mated spermatheca29 ± 23 of 4 2.16Up
Adult carcass19 ± 60 of 4 1.40None
Larval CNS4 ± 30 of 4 0.36None
Larval Salivary gland15 ± 40 of 4 1.17None
Larval midgut22 ± 20 of 4 1.65None
Larval tubule11 ± 40 of 4 0.80None
Larval hindgut12 ± 30 of 4 0.93None
Larval fat body29 ± 60 of 4 2.20None
Larval trachea18 ± 61 of 4 1.34None
Larval carcass26 ± 40 of 4 1.99Up
S2 cells (growing)11 ± 10 of 4 0.83None
Whole fly13 ± 30 of 4

Looking for CG6460-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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