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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6465-RA through 18771 annotations produced 1 hits



(CG6465):

Annotation Number : CG6465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037818
Gbrowse : chr3R:6501280-6502892 (-) // 100.0 //
Probeset : 1634971_at
Accessions : protein= NP_650004;, nucleotide= NM_141747;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004046 // aminoacylase activity // inferred from sequence or structural similarity /// 0004046 // aminoacylase activity
FlyMine data for FBgn0037818.
BDGP gene expression has embryonic in situ data for CG6465: 21 pix of staining in 7 body parts.
Homophila reports that CG6465 is a close match (4e-109) to human gene ACY1;ACY1D (NP_000657), a gene associated with Aminoacylase 1 deficiency, 609924 (3).
VDRC has 1 RNAi stocks for FBgn0037818 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 ± 64 of 4 2.50Up
Head112 ± 64 of 4 1.40Up
Eye29 ± 24 of 4 0.37Down
Thoracicoabdominal ganglion298 ± 234 of 4 3.80Up
Salivary gland17 ± 20 of 4 0.22Down
Crop6 ± 10 of 4 0.10Down
Midgut188 ± 144 of 4 2.40Up
Tubule3646 ± 3094 of 446.50Up
Hindgut31 ± 23 of 4 0.40Down
Heart82 ± 44 of 4 1.05None
Fat body134 ± 254 of 4 1.71Up
Ovary2 ± 00 of 4 0.00Down
Testis76 ± 54 of 4 1.00None
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca76 ± 124 of 4 0.97None
Mated spermatheca140 ± 244 of 4 1.79None
Adult carcass79 ± 54 of 4 1.00None
Larval CNS7 ± 10 of 4 0.09Down
Larval Salivary gland9 ± 20 of 4 0.12Down
Larval midgut14 ± 10 of 4 0.18Down
Larval tubule1040 ± 684 of 413.30Up
Larval hindgut8 ± 00 of 4 0.11Down
Larval fat body31 ± 53 of 4 0.40Down
Larval trachea5 ± 10 of 4 0.07Down
Larval carcass10 ± 01 of 4 0.13Down
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly78 ± 84 of 4

Looking for CG6465-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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