FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6470-RA through 18771 annotations produced 1 hits

(CG6470):

Annotation Number : CG6470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030933
Gbrowse : chrX:18406853-18408843 (-) // 100.0 //
Probeset : 1638699_at
Accessions : protein= NP_573304;, nucleotide= NM_133076;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0030933.
BDGP gene expression has embryonic in situ data for CG6470: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030933 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 0	1 of 4	0.20	Down
Head	3 ± 1	0 of 4	0.10	Down
Eye	7 ± 1	0 of 4	0.12	Down
Thoracicoabdominal ganglion	21 ± 1	2 of 4	0.40	Down
Salivary gland	3 ± 2	0 of 4	0.06	Down
Crop	4 ± 1	0 of 4	0.10	Down
Midgut	5 ± 2	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	4 ± 1	0 of 4	0.07	Down
Fat body	4 ± 3	0 of 4	0.08	Down
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	700 ± 13	4 of 4	11.70	Up
Male accessory glands	824 ± 24	4 of 4	13.80	Up
Virgin spermatheca	2 ± 1	0 of 4	0.05	Down
Mated spermatheca	6 ± 1	0 of 4	0.11	Down
Adult carcass	6 ± 2	0 of 4	0.10	Down
Larval CNS	17 ± 2	4 of 4	0.28	Down
Larval Salivary gland	11 ± 1	0 of 4	0.19	Down
Larval midgut	2 ± 0	0 of 4	0.05	Down
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	3 ± 2	0 of 4	0.06	Down
Larval fat body	71 ± 35	3 of 4	1.20	None
Larval trachea	5 ± 4	1 of 4	0.09	Down
Larval carcass	10 ± 2	0 of 4	0.17	Down
S2 cells (growing)	5 ± 1	0 of 4	0.08	Down
Whole fly	59 ± 1	4 of 4

Looking for CG6470-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720