Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6472-RA through 18771 annotations produced 1 hits



(CG6472):

Annotation Number : CG6472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034166
Gbrowse : chr2R:12767777-12772005 (+) // 100.0 //
Probeset : 1624655_at
Accessions : protein= NP_611166;, nucleotide= NM_137322;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016298 // lipase activity // inferred from seq
FlyMine data for FBgn0034166.
Homophila reports that CG6472 is a close match (3e-30) to human gene LIPI;LPDL;PRED5 (NP_945347), a gene associated with {Hypertriglyceridemia, susceptibility to}, 145750 (3).
VDRC has 3 RNAi stocks for FBgn0034166 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head28 ± 14 of 4 4.80Up
Eye80 ± 124 of 413.64Up
Thoracicoabdominal ganglion4 ± 20 of 4 0.80None
Salivary gland24 ± 63 of 4 4.22None
Crop14 ± 13 of 4 2.50Up
Midgut7 ± 20 of 4 1.30None
Tubule3 ± 00 of 4 0.50Down
Hindgut42 ± 24 of 4 7.20Up
Heart3 ± 00 of 4 0.54None
Fat body3 ± 10 of 4 0.54None
Ovary1 ± 00 of 4 0.20None
Testis8 ± 13 of 4 1.50None
Male accessory glands9 ± 40 of 4 1.60None
Virgin spermatheca7 ± 20 of 4 1.31None
Mated spermatheca7 ± 10 of 4 1.22None
Adult carcass10 ± 20 of 4 1.70None
Larval CNS1 ± 10 of 4 0.29None
Larval Salivary gland2 ± 10 of 4 0.45None
Larval midgut1 ± 00 of 4 0.25None
Larval tubule2 ± 00 of 4 0.40None
Larval hindgut8 ± 11 of 4 1.48None
Larval fat body7 ± 20 of 4 1.20None
Larval trachea6 ± 20 of 4 1.16None
Larval carcass4 ± 10 of 4 0.70None
S2 cells (growing)13 ± 04 of 4 2.30Up
Whole fly5 ± 21 of 4

Looking for CG6472-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime