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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6483-RA through 18771 annotations produced 1 hits


Jonah 65A (Jon65Aiii):

Annotation Number : CG6483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035665
Gbrowse : chr3L:6043873-6044796 (+) // 99.54 //
Probeset : 1626093_at
Accessions : protein= NP_648013;, nucleotide= NM_139756;
Pathway : 0030018 // Z disc // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0035665.
BDGP gene expression has embryonic in situ data for CG6483: 12 pix of staining in 3 body parts.
Homophila reports that CG6483 is a close match (5e-11) to human gene LPA (NP_005568), a gene associated with [LPA deficiency, congenital] (3);{Coronary artery disease, susceptibility to} (1).
VDRC has 2 RNAi stocks for FBgn0035665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head88 ± 722 of 4 0.00Down
Eye53 ± 412 of 4 0.01Down
Thoracicoabdominal ganglion8 ± 20 of 4 0.00Down
Salivary gland16 ± 81 of 4 0.00Down
Crop71 ± 382 of 4 0.00Down
Midgut6715 ± 934 of 4 1.60Up
Tubule4 ± 10 of 4 0.00Down
Hindgut462 ± 464 of 4 0.10Down
Heart10 ± 11 of 4 0.00Down
Fat body10 ± 30 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis18 ± 171 of 4 0.00Down
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca6 ± 20 of 4 0.00Down
Mated spermatheca19 ± 51 of 4 0.00Down
Adult carcass110 ± 453 of 4 0.00Down
Larval CNS5 ± 40 of 4 0.00Down
Larval Salivary gland13 ± 30 of 4 0.00Down
Larval midgut5348 ± 1904 of 4 1.30Up
Larval tubule7 ± 10 of 4 0.00Down
Larval hindgut56 ± 173 of 4 0.01Down
Larval fat body375 ± 2043 of 4 0.10Down
Larval trachea354 ± 6353 of 4 0.09Down
Larval carcass15 ± 41 of 4 0.00Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly4123 ± 1834 of 4

Looking for CG6483-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime