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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6489-RA through 18771 annotations produced 2 hits



heat shock 70 (Hsp70Bc):

Annotation Number : CG6489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013279
Gbrowse : chrUextra:698626-699463 (+) // 37.86 // /// chr3R:8334797-8337008 (+) // 100.0 // /// chr3R:8328231-8330448 (+) // 99.64 // /// chr3R:8331514-8333731 (+) // 99.59 // /// chr3R:7784258-7786445 (+) // 94.53 // /// chr3R:8291304-8293514 (-) // 99.05 // /// chr3R:7780076-7782263 (-) // 94.48 //
Probeset : 1632841_x_at
Accessions : protein= NP_524927; /// NP_650209;, nucleotide= NM_080188; /// NM_141952;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0013279.
BioGrid reports that CG6489 interacts with CG32130 CG5203 CG7945 CG1968 CG31122 CG31163 CG31534 CG32491 CG32772 CG4730 CG4835 CG4853 CG5618 CG5645 CG5680 CG6608 CG7146 CG7570 CG8120 CG8286 CG8697 CG9331 CG9614 CG9986 .
TRiP has 1 RNAi stocks for FBgn0013279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 24 of 4 4.00Up
Head7 02 of 4 1.60None
Eye2 00 of 4 0.45None
Thoracicoabdominal ganglion15 24 of 4 3.30Up
Salivary gland46 84 of 4 9.90Up
Crop13 23 of 4 2.90Up
Midgut8 10 of 4 1.70None
Tubule769 2272 of 4164.60Up
Hindgut4 00 of 4 0.90None
Heart16 62 of 4 3.43None
Fat body8 50 of 4 1.85None
Ovary2 11 of 4 0.50None
Testis7 14 of 4 1.50None
Male accessory glands2 10 of 4 0.50None
Virgin spermatheca2 00 of 4 0.52None
Mated spermatheca50 292 of 410.75None
Adult carcass6 10 of 4 1.40None
Larval CNS16 144 of 4 3.61None
Larval Salivary gland157 474 of 433.66Up
Larval midgut7 51 of 4 1.64None
Larval tubule17 112 of 4 3.70None
Larval hindgut60 224 of 412.84None
Larval fat body23 112 of 4 4.90None
Larval trachea10 112 of 4 2.29None
Larval carcass20 53 of 4 4.42None
S2 cells (growing)67 64 of 414.51Up
Whole fly4 10 of 4



heat shock 70 /// 87C locus /// Hsp70Bbb /// heat shock 70 (Hsp70Ba /// Hsp70Bb /// Hsp70Bbb /// Hsp70Bc):

Annotation Number : CG6489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013277 /// FBgn0013278 /// FBgn0013279 /// FBgn0051354
Gbrowse : chrUextra:698626-699463 (+) // 37.86 // /// chr3R:8334797-8337008 (+) // 100.0 // /// chr3R:8328231-8330448 (+) // 99.64 // /// chr3R:8331514-8333731 (+) // 99.59 // /// chr3R:7784258-7786445 (+) // 94.53 // /// chr3R:8291304-8293514 (-) // 99.05 // /// chr3R:7780076-7782263 (-) // 94.48 //
Probeset : 1626821_s_at
Accessions : protein= NP_524927; /// NP_650209; /// NP_731716; /// NP_788663;, nucleotide= NM_080188; /// NM_141952; /// NM_169469; /// NM_176486;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0013277 /// FBgn0013278 /// FBgn0013279 /// FBgn0051354.
BioGrid reports that CG6489 interacts with CG32130 CG5203 CG7945 CG1968 CG31122 CG31163 CG31534 CG32491 CG32772 CG4730 CG4835 CG4853 CG5618 CG5645 CG5680 CG6608 CG7146 CG7570 CG8120 CG8286 CG8697 CG9331 CG9614 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 24 of 4 3.20Up
Head22 23 of 4 1.60Up
Eye14 41 of 4 0.99None
Thoracicoabdominal ganglion43 24 of 4 3.10Up
Salivary gland106 104 of 4 7.49Up
Crop39 74 of 4 2.80Up
Midgut18 20 of 4 1.30None
Tubule1240 3742 of 487.50Up
Hindgut12 00 of 4 0.90None
Heart64 264 of 4 4.57None
Fat body26 103 of 4 1.88None
Ovary6 10 of 4 0.40Down
Testis21 24 of 4 1.50Up
Male accessory glands8 30 of 4 0.60None
Virgin spermatheca6 10 of 4 0.42Down
Mated spermatheca155 823 of 410.97None
Adult carcass8 00 of 4 0.60Down
Larval CNS67 534 of 4 4.77None
Larval Salivary gland419 1144 of 429.58Up
Larval midgut32 151 of 4 2.29None
Larval tubule42 224 of 4 3.00None
Larval hindgut169 404 of 411.94Up
Larval fat body31 113 of 4 2.30None
Larval trachea44 494 of 4 3.17None
Larval carcass78 194 of 4 5.56Up
S2 cells (growing)258 254 of 418.20Up
Whole fly14 12 of 4

Looking for CG6489-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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