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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6490-RA through 18771 annotations produced 1 hits



(CG6490):

Annotation Number : CG6490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:22295794-22303805 (-) // 100.0 //
Probeset : 1638563_at
Accessions : protein= NP_001163744; /// NP_651482;, nucleotide= NM_001170273; /// NM_143225;
Homophila reports that CG6490 is a close match (1e-13) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 74 of 4 4.40Up
Head42 ± 34 of 4 1.00None
Eye47 ± 64 of 4 1.15None
Thoracicoabdominal ganglion158 ± 74 of 4 3.90Up
Salivary gland12 ± 31 of 4 0.30Down
Crop50 ± 64 of 4 1.20None
Midgut7 ± 21 of 4 0.20Down
Tubule7 ± 12 of 4 0.20Down
Hindgut34 ± 34 of 4 0.80None
Heart27 ± 44 of 4 0.67None
Fat body19 ± 64 of 4 0.48Down
Ovary81 ± 24 of 4 2.00Up
Testis9 ± 04 of 4 0.20Down
Male accessory glands72 ± 24 of 4 1.80Up
Virgin spermatheca13 ± 24 of 4 0.32Down
Mated spermatheca12 ± 13 of 4 0.31Down
Adult carcass18 ± 14 of 4 0.40Down
Larval CNS481 ± 614 of 411.73Up
Larval Salivary gland17 ± 24 of 4 0.42Down
Larval midgut15 ± 12 of 4 0.37Down
Larval tubule14 ± 23 of 4 0.30Down
Larval hindgut37 ± 24 of 4 0.92None
Larval fat body9 ± 13 of 4 0.20Down
Larval trachea150 ± 204 of 4 3.67Up
Larval carcass34 ± 34 of 4 0.84None
S2 cells (growing)266 ± 54 of 4 6.50Up
Whole fly41 ± 44 of 4

Looking for CG6490-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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