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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6493-RA through 18771 annotations produced 1 hits



Dicer-2 (Dcr-2):

Annotation Number : CG6493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034246
Gbrowse : chr2R:13462612-13469011 (-) // 100.0 //
Probeset : 1641449_at
Accessions : protein= NP_523778;, nucleotide= NM_079054;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elec
FlyMine data for FBgn0034246.
TRiP has 2 RNAi stocks for FBgn0034246 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 14 of 4 0.70Down
Head136 ± 64 of 4 0.90None
Eye58 ± 14 of 4 0.41Down
Thoracicoabdominal ganglion100 ± 34 of 4 0.70Down
Salivary gland167 ± 144 of 4 1.16None
Crop202 ± 114 of 4 1.40Up
Midgut209 ± 94 of 4 1.50Up
Tubule204 ± 74 of 4 1.40Up
Hindgut192 ± 24 of 4 1.30Up
Heart125 ± 54 of 4 0.87None
Fat body309 ± 214 of 4 2.15Up
Ovary279 ± 44 of 4 1.90Up
Testis88 ± 24 of 4 0.60Down
Male accessory glands186 ± 24 of 4 1.30Up
Virgin spermatheca342 ± 174 of 4 2.38Up
Mated spermatheca333 ± 84 of 4 2.31Up
Adult carcass151 ± 94 of 4 1.00None
Larval CNS229 ± 154 of 4 1.59Up
Larval Salivary gland233 ± 84 of 4 1.62Up
Larval midgut195 ± 84 of 4 1.36Up
Larval tubule381 ± 24 of 4 2.60Up
Larval hindgut249 ± 104 of 4 1.73Up
Larval fat body320 ± 244 of 4 2.20Up
Larval trachea216 ± 124 of 4 1.50Up
Larval carcass161 ± 134 of 4 1.12None
S2 cells (growing)350 ± 144 of 4 2.43Up
Whole fly144 ± 74 of 4

Looking for CG6493-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime