FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6494-RA through 18771 annotations produced 1 hits

chr3L:8669058-8672339 (+) // 100.0 // (hairy):

Annotation Number : CG6494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624839_at
Accessions : protein= , nucleotide= NP_001014577; /// NP_523977;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0
Interpro : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
FlyMine data for full length.
BioGrid reports that CG6494 interacts with CG3796 CG3796 CG3796 CG3796 CG2047 CG8384 CG7583 CG7583 CG7583 CG10393 CG7508 CG7672 CG3839 CG3839 CG3839 CG3839 CG3827 CG3827 Dmel CG18350 CG7583 CG8384 CG10388 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	87 ± 4	4 of 4	0.20	Down
Head	585 ± 45	4 of 4	1.10	None
Eye	645 ± 55	4 of 4	1.20	None
Thoracicoabdominal ganglion	139 ± 8	4 of 4	0.30	Down
Salivary gland	1216 ± 87	4 of 4	2.26	Up
Crop	2213 ± 56	4 of 4	4.10	Up
Midgut	1261 ± 50	4 of 4	2.30	Up
Tubule	2472 ± 528	4 of 4	4.60	Up
Hindgut	1735 ± 96	4 of 4	3.20	Up
Heart	1871 ± 88	4 of 4	3.48	Up
Fat body	1201 ± 48	4 of 4	2.24	Up
Ovary	126 ± 6	4 of 4	0.20	Down
Testis	94 ± 3	4 of 4	0.20	Down
Male accessory glands	1200 ± 41	4 of 4	2.20	Up
Virgin spermatheca	1787 ± 80	4 of 4	3.33	Up
Mated spermatheca	1778 ± 90	4 of 4	3.31	Up
Adult carcass	1088 ± 111	4 of 4	2.00	Up
Larval CNS	92 ± 8	4 of 4	0.17	Down
Larval Salivary gland	1032 ± 101	4 of 4	1.92	Up
Larval midgut	1004 ± 80	4 of 4	1.87	Up
Larval tubule	1148 ± 27	4 of 4	2.10	Up
Larval hindgut	1865 ± 20	4 of 4	3.47	Up
Larval fat body	1037 ± 112	4 of 4	1.90	Up
Larval trachea	2254 ± 74	4 of 4	4.19	Up
Larval carcass	860 ± 32	4 of 4	1.60	Up
S2 cells (growing)	1666 ± 49	4 of 4	3.10	Up
Whole fly	537 ± 44	4 of 4

Looking for CG6494-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720