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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6496-RA through 18771 annotations produced 1 hits



pigment-dispersing factor (Pdf):

Annotation Number : CG6496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023178
Gbrowse : chr3R:22281181-22281863 (-) // 100.0 //
Probeset : 1633908_at
Accessions : protein= NP_524517;, nucleotide= NM_079793;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred b
Interpro : 0005102 // receptor binding // inferred from physical interaction /// 0005179 // hormone activity // inferred from elect
FlyMine data for FBgn0023178.
BDGP gene expression has embryonic in situ data for Pdf: 19 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0023178 available for purchase.
VDRC has 4 RNAi stocks for FBgn0023178 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1365 234 of 444.20Up
Head368 274 of 411.90Up
Eye12 22 of 4 0.41Down
Thoracicoabdominal ganglion539 524 of 417.50Up
Salivary gland3 10 of 4 0.10Down
Crop1 00 of 4 0.10Down
Midgut1 10 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.04Down
Fat body2 30 of 4 0.08Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass16 30 of 4 0.50Down
Larval CNS121 274 of 4 3.93Up
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut3 10 of 4 0.10Down
Larval tubule1 10 of 4 0.10Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body1 00 of 4 0.00Down
Larval trachea0 00 of 4 0.02Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)2 00 of 4 0.07Down
Whole fly30 43 of 4

Looking for CG6496-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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