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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6499-RA through 18771 annotations produced 1 hits



(CG6499):

Annotation Number : CG6499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038309
Gbrowse : chr3R:11072968-11076264 (-) // 100.0 //
Probeset : 1633393_at
Accessions : protein= NP_001097800;, nucleotide= NM_001104330;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0008519 // ammonium transmembrane transporter activity // inferred from sequence or structural similarity /// 0008519 //
FlyMine data for FBgn0038309.
VDRC has 2 RNAi stocks for FBgn0038309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head66 54 of 412.40Up
Eye5 20 of 4 1.04None
Thoracicoabdominal ganglion4 20 of 4 0.80None
Salivary gland9 30 of 4 1.71None
Crop1 00 of 4 0.30None
Midgut1 00 of 4 0.30None
Tubule2 00 of 4 0.40Down
Hindgut3 10 of 4 0.70None
Heart12 01 of 4 2.25Up
Fat body15 80 of 4 2.80None
Ovary0 00 of 4 0.10None
Testis2 00 of 4 0.40None
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca0 00 of 4 0.15None
Mated spermatheca1 00 of 4 0.21None
Adult carcass5 20 of 4 0.90None
Larval CNS1 10 of 4 0.33None
Larval Salivary gland8 30 of 4 1.55None
Larval midgut2 00 of 4 0.38None
Larval tubule3 00 of 4 0.60None
Larval hindgut4 10 of 4 0.79None
Larval fat body2 10 of 4 0.50None
Larval trachea5 20 of 4 1.00None
Larval carcass3 00 of 4 0.56None
S2 cells (growing)11 21 of 4 2.19None
Whole fly5 10 of 4

Looking for CG6499-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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