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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6502-RA through 18771 annotations produced 1 hits



Enhancer of zeste (E(z)):

Annotation Number : CG6502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000629
Gbrowse : chr3L:10627667-10631230 (-) // 100.0 //
Probeset : 1626696_at
Accessions : protein= NP_001137932; /// NP_524021;, nucleotide= NM_001144460; /// NM_079297;
Pathway : DNA-dependent // inferred from direct assay /// 0048813 // dendrite morphogenesis // inferred from mutant phenotype ///
Interpro : 0000790 // nuclear chromatin // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay ///
FlyMine data for FBgn0000629.
BDGP gene expression has embryonic in situ data for E(z): 11 pix of staining in 10 body parts.
Homophila reports that CG6502 is a close match (5e-13) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG6502 interacts with CG8787 CG8787 CG3068 CG5942 CG7776 CG7776 CG14941 CG8103 CG32443 CG32443 CG32443 CG32443 CG5109 CG5650 CG5650 CG3886 CG3886 CG9495 CG1064 CG1064 CG8887 CG8887 CG8887 CG6677 CG11387 CG9696 CG14941 CG14941 CG14941 CG8491 CG8491 CG12058 CG5637 CG7467 CG7467 CG18412 CG17743 CG9936 CG1915 CG2759 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG7803 CG5595 CG33261 CG33261 CG5109 CG8013 CG6502 CG7471 CG14941 CG8013 CG7471 CG5109 CG7471 CG14941 CG7471 CG4236 CG5109 CG5109 .
TRiP has 4 RNAi stocks for FBgn0000629 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 24 of 4 1.20Up
Head41 14 of 4 0.60Down
Eye49 24 of 4 0.68Down
Thoracicoabdominal ganglion65 04 of 4 0.90None
Salivary gland69 74 of 4 0.95None
Crop44 24 of 4 0.60Down
Midgut49 34 of 4 0.70Down
Tubule66 44 of 4 0.90None
Hindgut44 24 of 4 0.60Down
Heart38 04 of 4 0.53Down
Fat body31 24 of 4 0.43Down
Ovary183 54 of 4 2.50Up
Testis32 24 of 4 0.40Down
Male accessory glands69 64 of 4 1.00None
Virgin spermatheca45 24 of 4 0.63Down
Mated spermatheca50 24 of 4 0.69Down
Adult carcass39 53 of 4 0.50Down
Larval CNS141 84 of 4 1.95Up
Larval Salivary gland88 54 of 4 1.22None
Larval midgut29 34 of 4 0.41Down
Larval tubule73 34 of 4 1.00None
Larval hindgut36 24 of 4 0.50Down
Larval fat body51 34 of 4 0.70Down
Larval trachea76 54 of 4 1.06None
Larval carcass40 34 of 4 0.56Down
S2 cells (growing)102 34 of 4 1.41Up
Whole fly72 44 of 4

Looking for CG6502-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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