Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6509-RB through 18771 annotations produced 1 hits



(CG6509):

Annotation Number : CG6509
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032363
Gbrowse : chr2L:11508398-11517057 (-) // 100.0 //
Probeset : 1625113_s_at
Accessions : protein= NP_609505; /// NP_723672;, nucleotide= NM_135661; /// NM_164967;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0032363.
Homophila reports that CG6509 is a close match (5e-27) to human gene TJP2;ZO2 (NP_004808), a gene associated with Hypercholanemia, familial, 607748 (3).
TRiP has 1 RNAi stocks for FBgn0032363 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032363 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 ± 54 of 4 1.90Up
Head86 ± 44 of 4 0.80Down
Eye112 ± 94 of 4 1.04None
Thoracicoabdominal ganglion164 ± 104 of 4 1.50Up
Salivary gland228 ± 134 of 4 2.12Up
Crop248 ± 144 of 4 2.30Up
Midgut159 ± 94 of 4 1.50Up
Tubule151 ± 44 of 4 1.40Up
Hindgut156 ± 34 of 4 1.40Up
Heart102 ± 64 of 4 0.95None
Fat body89 ± 94 of 4 0.83Down
Ovary374 ± 114 of 4 3.50Up
Testis34 ± 04 of 4 0.30Down
Male accessory glands160 ± 164 of 4 1.50Up
Virgin spermatheca81 ± 54 of 4 0.76Down
Mated spermatheca97 ± 74 of 4 0.91None
Adult carcass109 ± 34 of 4 1.00None
Larval CNS182 ± 94 of 4 1.69Up
Larval Salivary gland236 ± 94 of 4 2.19Up
Larval midgut153 ± 124 of 4 1.43Up
Larval tubule228 ± 54 of 4 2.10Up
Larval hindgut232 ± 44 of 4 2.16Up
Larval fat body94 ± 84 of 4 0.90None
Larval trachea226 ± 264 of 4 2.10Up
Larval carcass239 ± 34 of 4 2.22Up
S2 cells (growing)306 ± 124 of 4 2.84Up
Whole fly107 ± 54 of 4

Looking for CG6509-RB. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime