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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6515-RA through 18771 annotations produced 1 hits



Neuropeptide receptor (Takr86C):

Annotation Number : CG6515
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004841
Gbrowse : chr3R:6563306-6576539 (-) // 100.0 //
Probeset : 1626723_at
Accessions : protein= NP_001097741; /// NP_524304;, nucleotide= NM_001104271; /// NM_079580;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0004841.
Homophila reports that CG6515 is a close match (2e-12) to human gene ADRB1;ADRB1R;RHR (NP_000675), a gene associated with [Resting heart rate], 607276 (3);{congestive heart failure, susceptibility to} (3).
TRiP has 1 RNAi stocks for FBgn0004841 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 24 of 430.70Up
Head14 ± 13 of 4 7.20Up
Eye1 ± 00 of 4 0.68None
Thoracicoabdominal ganglion32 ± 34 of 416.60Up
Salivary gland11 ± 50 of 4 5.88None
Crop1 ± 00 of 4 0.90None
Midgut0 ± 00 of 4 0.40None
Tubule6 ± 10 of 4 3.20Up
Hindgut1 ± 00 of 4 0.80None
Heart0 ± 00 of 4 0.17None
Fat body1 ± 10 of 4 0.91None
Ovary2 ± 10 of 4 1.30None
Testis9 ± 00 of 4 4.90Up
Male accessory glands1 ± 00 of 4 0.90None
Virgin spermatheca0 ± 00 of 4 0.45None
Mated spermatheca1 ± 00 of 4 0.68None
Adult carcass1 ± 00 of 4 0.70None
Larval CNS40 ± 54 of 420.71Up
Larval Salivary gland1 ± 00 of 4 0.72None
Larval midgut1 ± 00 of 4 0.53None
Larval tubule6 ± 20 of 4 3.50None
Larval hindgut0 ± 00 of 4 0.32None
Larval fat body1 ± 00 of 4 0.70None
Larval trachea1 ± 20 of 4 0.88None
Larval carcass2 ± 10 of 4 1.19None
S2 cells (growing)0 ± 00 of 4 0.36None
Whole fly2 ± 10 of 4

Looking for CG6515-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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