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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6517-RA through 18771 annotations produced 1 hits


Shell-18 (Cp18):

Annotation Number : CG6517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000357
Gbrowse : chr3L:8719934-8720627 (+) // 100.0 //
Probeset : 1631556_at
Accessions : protein= NP_523978;, nucleotide= NM_079254;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0042600 // chorion // inferred from electroni
Interpro : 0005213 // structural constituent of chorion // non-traceable author statement /// 0005213 // structural constituent of
FlyMine data for FBgn0000357.
BioGrid reports that CG6517 interacts with CG7098 .
VDRC has 2 RNAi stocks for FBgn0000357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 10 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye12 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion26 ± 51 of 4 0.00Down
Salivary gland29 ± 150 of 4 0.01Down
Crop9 ± 20 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule11 ± 20 of 4 0.00Down
Hindgut6 ± 10 of 4 0.00Down
Heart9 ± 30 of 4 0.00Down
Fat body30 ± 471 of 4 0.01Down
Ovary2639 ± 1394 of 4 1.10None
Testis9 ± 10 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca6 ± 20 of 4 0.00Down
Mated spermatheca2 ± 00 of 4 0.00Down
Adult carcass18 ± 120 of 4 0.00Down
Larval CNS9 ± 30 of 4 0.00Down
Larval Salivary gland4 ± 10 of 4 0.00Down
Larval midgut9 ± 30 of 4 0.00Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut8 ± 10 of 4 0.00Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea7 ± 30 of 4 0.00Down
Larval carcass21 ± 60 of 4 0.01Down
S2 cells (growing)5 ± 00 of 4 0.00Down
Whole fly2345 ± 5884 of 4

Looking for CG6517-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime