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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6520-RA through 18771 annotations produced 1 hits



(CG6520):

Annotation Number : CG6520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034224
Gbrowse : chr2R:13362702-13363566 (-) // 100.0 //
Probeset : 1627238_at
Accessions : protein= NP_611216;, nucleotide= NM_137372;
FlyMine data for FBgn0034224.
VDRC has 1 RNAi stocks for FBgn0034224 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.90None
Head7 ± 03 of 4 1.30None
Eye3 ± 10 of 4 0.59None
Thoracicoabdominal ganglion5 ± 10 of 4 0.80None
Salivary gland13 ± 30 of 4 2.20None
Crop7 ± 20 of 4 1.20None
Midgut7 ± 11 of 4 1.20None
Tubule4 ± 10 of 4 0.80None
Hindgut6 ± 21 of 4 1.00None
Heart6 ± 10 of 4 1.01None
Fat body9 ± 32 of 4 1.59None
Ovary3 ± 10 of 4 0.50None
Testis2 ± 10 of 4 0.40None
Male accessory glands15 ± 13 of 4 2.60Up
Virgin spermatheca10 ± 21 of 4 1.69None
Mated spermatheca7 ± 20 of 4 1.23None
Adult carcass19 ± 21 of 4 3.20Up
Larval CNS344 ± 154 of 457.38Up
Larval Salivary gland13 ± 22 of 4 2.19Up
Larval midgut10 ± 10 of 4 1.78Up
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut5 ± 11 of 4 0.98None
Larval fat body10 ± 11 of 4 1.70None
Larval trachea7 ± 22 of 4 1.33None
Larval carcass4 ± 00 of 4 0.72None
S2 cells (growing)7 ± 01 of 4 1.32None
Whole fly6 ± 02 of 4

Looking for CG6520-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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