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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6536-RA through 18771 annotations produced 1 hits



methuselah-like 4 (mthl4):

Annotation Number : CG6536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034219
Gbrowse : chrUextra:13596162-13596889 (+) // 42.13 // /// chrUextra:13016046-13016713 (+) // 38.25 // /// chr2R:13332990-13334733 (-) // 100.0 //
Probeset : 1627967_a_at
Accessions : protein= NP_788394;, nucleotide= NM_176214;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0034219.
BioGrid reports that CG6536 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0034219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.20Down
Head17 ± 13 of 4 0.70Down
Eye9 ± 42 of 4 0.41Down
Thoracicoabdominal ganglion15 ± 21 of 4 0.70Down
Salivary gland56 ± 43 of 4 2.33Up
Crop72 ± 44 of 4 3.00Up
Midgut61 ± 44 of 4 2.50Up
Tubule69 ± 34 of 4 2.90Up
Hindgut65 ± 34 of 4 2.70Up
Heart80 ± 44 of 4 3.28Up
Fat body44 ± 94 of 4 1.82Up
Ovary11 ± 11 of 4 0.50Down
Testis61 ± 64 of 4 2.50Up
Male accessory glands77 ± 24 of 4 3.20Up
Virgin spermatheca39 ± 44 of 4 1.60Up
Mated spermatheca41 ± 23 of 4 1.69Up
Adult carcass35 ± 13 of 4 1.40Up
Larval CNS42 ± 64 of 4 1.75Up
Larval Salivary gland184 ± 304 of 4 7.58Up
Larval midgut60 ± 64 of 4 2.48Up
Larval tubule120 ± 44 of 4 4.90Up
Larval hindgut66 ± 34 of 4 2.74Up
Larval fat body93 ± 64 of 4 3.80Up
Larval trachea183 ± 264 of 4 7.55Up
Larval carcass107 ± 124 of 4 4.40Up
S2 cells (growing)169 ± 44 of 4 6.97Up
Whole fly24 ± 14 of 4

Looking for CG6536-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime