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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6543-RA through 18771 annotations produced 1 hits



(CG6543):

Annotation Number : CG6543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033879
Gbrowse : chr2R:9740451-9741853 (-) // 100.0 //
Probeset : 1640466_s_at
Accessions : protein= NP_610910; /// NP_725332;, nucleotide= NM_137066; /// NM_166014;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005759 // mitochondrial matrix // infer
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // infe
FlyMine data for FBgn0033879.
BDGP gene expression has embryonic in situ data for CG6543: 15 pix of staining in 9 body parts.
Homophila reports that CG6543 is a close match (3e-12) to human gene HIBCH (NP_932164), a gene associated with 3-hydroxyisobutryl-CoA hydrolase deficiency, 250620 (3).
TRiP has 1 RNAi stocks for FBgn0033879 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033879 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 54 of 4 0.30Down
Head997 524 of 4 1.40Up
Eye852 554 of 4 1.20None
Thoracicoabdominal ganglion234 144 of 4 0.30Down
Salivary gland547 244 of 4 0.77None
Crop940 544 of 4 1.30Up
Midgut937 414 of 4 1.30Up
Tubule1281 1204 of 4 1.80Up
Hindgut757 164 of 4 1.10None
Heart1517 814 of 4 2.14Up
Fat body2016 2844 of 4 2.84Up
Ovary879 164 of 4 1.20None
Testis167 64 of 4 0.20Down
Male accessory glands352 274 of 4 0.50Down
Virgin spermatheca1279 984 of 4 1.80Up
Mated spermatheca702 414 of 4 0.99None
Adult carcass1453 594 of 4 2.00Up
Larval CNS668 1214 of 4 0.94None
Larval Salivary gland2047 1224 of 4 2.88Up
Larval midgut1024 434 of 4 1.44Up
Larval tubule1163 1764 of 4 1.60None
Larval hindgut1793 454 of 4 2.53Up
Larval fat body828 1014 of 4 1.20None
Larval trachea1838 684 of 4 2.59Up
Larval carcass1799 1934 of 4 2.53Up
S2 cells (growing)468 184 of 4 0.66Down
Whole fly710 644 of 4

Looking for CG6543-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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