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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6556-RA through 18771 annotations produced 1 hits

connector enhancer of KSR (cnk):

Annotation Number : CG6556
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021818
Gbrowse : chr2R:13301475-13307104 (-) // 100.0 //
Probeset : 1632784_at
Accessions : protein= NP_725671;, nucleotide= NM_166223;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
Interpro : embryo // traceable author statement"
FlyMine data for FBgn0021818.
BioGrid reports that CG6556 interacts with CG2845 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG18085 CG2845 .
TRiP has 2 RNAi stocks for FBgn0021818 available for purchase.
VDRC has 1 RNAi stocks for FBgn0021818 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 44 of 4 1.30Up
Head100 34 of 4 0.70Down
Eye128 24 of 4 0.95None
Thoracicoabdominal ganglion172 34 of 4 1.30Up
Salivary gland143 44 of 4 1.06None
Crop193 64 of 4 1.40Up
Midgut99 44 of 4 0.70Down
Tubule125 44 of 4 0.90Down
Hindgut142 84 of 4 1.10None
Heart107 64 of 4 0.80Down
Fat body101 54 of 4 0.75Down
Ovary365 54 of 4 2.70Up
Testis56 14 of 4 0.40Down
Male accessory glands150 114 of 4 1.10None
Virgin spermatheca121 104 of 4 0.90None
Mated spermatheca121 24 of 4 0.90Down
Adult carcass88 34 of 4 0.70Down
Larval CNS237 134 of 4 1.76Up
Larval Salivary gland215 124 of 4 1.59Up
Larval midgut177 94 of 4 1.31Up
Larval tubule190 94 of 4 1.40Up
Larval hindgut232 104 of 4 1.72Up
Larval fat body107 74 of 4 0.80Down
Larval trachea200 164 of 4 1.48Up
Larval carcass243 54 of 4 1.80Up
S2 cells (growing)334 74 of 4 2.47Up
Whole fly135 34 of 4

Looking for CG6556-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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