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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6560-RA through 18771 annotations produced 1 hits



ADP-ribosylation factor-like 3 (dnd):

Annotation Number : CG6560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038916
Gbrowse : chr3R:17711397-17713073 (-) // 100.0 //
Probeset : 1638592_at
Accessions : protein= NP_650995;, nucleotide= NM_142738;
Pathway : open tracheal system // inferred from mutant phenotype /// 0042384 // cilium assembly // not recorded"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
FlyMine data for FBgn0038916.
BDGP gene expression has embryonic in situ data for CG6560: 31 pix of staining in 21 body parts.
Homophila reports that CG6560 is a close match (1e-23) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
TRiP has 2 RNAi stocks for FBgn0038916 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 24 of 4 1.00None
Head72 ± 44 of 4 1.30Up
Eye97 ± 64 of 4 1.70Up
Thoracicoabdominal ganglion51 ± 14 of 4 0.90None
Salivary gland20 ± 52 of 4 0.36Down
Crop6 ± 10 of 4 0.10Down
Midgut302 ± 84 of 4 5.30Up
Tubule1115 ± 834 of 419.50Up
Hindgut77 ± 54 of 4 1.40Up
Heart40 ± 34 of 4 0.70Down
Fat body92 ± 184 of 4 1.61Up
Ovary14 ± 24 of 4 0.20Down
Testis27 ± 34 of 4 0.50Down
Male accessory glands13 ± 11 of 4 0.20Down
Virgin spermatheca101 ± 114 of 4 1.76Up
Mated spermatheca57 ± 64 of 4 1.00None
Adult carcass42 ± 44 of 4 0.70Down
Larval CNS13 ± 13 of 4 0.23Down
Larval Salivary gland12 ± 03 of 4 0.22Down
Larval midgut52 ± 24 of 4 0.92None
Larval tubule157 ± 194 of 4 2.80Up
Larval hindgut7 ± 12 of 4 0.13Down
Larval fat body23 ± 14 of 4 0.40Down
Larval trachea13 ± 33 of 4 0.23Down
Larval carcass13 ± 43 of 4 0.24Down
S2 cells (growing)10 ± 10 of 4 0.19Down
Whole fly57 ± 24 of 4

Looking for CG6560-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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